Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs12402456 chr1:227402060 G/A 0 405 14.27 14.45 1.48 KM Plot
STAD rs12403175 chr1:182725386 G/T 4.96E-5 398 14.2 15.6 4.75 KM Plot
STAD rs12403391 chr1:227287627 T/C 0 406 14.32 14.15 1.48 KM Plot
STAD rs12403833 chr1:227285929 G/A 0 406 14.37 14.07 1.48 KM Plot
STAD rs12404416 chr1:227296624 A/G 0 404 14.37 14.07 1.48 KM Plot
STAD rs12404494 chr1:227287887 G/C 0 406 14.32 14.15 1.48 KM Plot
STAD rs12405122 chr1:227295038 G/A 0 404 14.37 14.15 0.27 KM Plot
STAD rs12405878 chr1:227304863 C/T 0 406 1.48 14.23 14.27 KM Plot
STAD rs12407061 chr1:227288049 C/T 0 406 14.37 14.07 1.48 KM Plot
STAD rs12408437 chr1:227315408 G/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs12408913 chr1:227389810 A/C 0 405 14.27 14.23 1.48 KM Plot
STAD rs12409816 chr1:227329770 G/A 0 405 14.37 14.15 1.48 KM Plot
STAD rs12410327 chr1:227443245 C/G 0 404 14.27 14.23 1.48 KM Plot
STAD rs12410337 chr1:227268258 T/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs12410460 chr1:227269582 A/C 0 406 14.27 14.23 1.48 KM Plot